DeepGO
A family of deep-learning models that incorporate formalized axioms to constrain learning for protein function prediction.
Software & Projects
A selection of the key software systems, tools, and databases developed by my research group.
PhenomeNET & PVP
A system combining automated reasoning, statistical methods, and machine learning to rank disease-causing genomic variants based on phenotype comparisons.
AberOWL
An infrastructure for ontology-based data access, providing a semantic reasoning layer over biomedical ontologies.