- Position
- Postdoc
- Current affiliation
- KAUST (Research Scientist)
- Institution
- KAUST
- Start
- 2020
- End
- 2021
Connections
advisor borg:advisor
on project borg:onProject
research topics borg:topic
- Neuro-symbolic methods in Bioinformatics
- Protein function prediction
- Applied Ontology
- Rare disease diagnostic support
- Genomics
- Semantic similarity
- Phenotype informatics
- Ontology engineering and semantic interoperability
- Metagenomics and microbial community function
- Biomedical informatics
- Drug mechanisms and systems biology
- Bioengineering
Referenced by
team borg:hasMember
authors schema:author
- DeepGOPlus: improved protein function prediction from sequence
- Phenotype-driven discovery of digenic variants in personal genome sequences
- PathoPhenoDB: linking human pathogens to their disease phenotypes in support of infectious disease research
- Using SPARQL to Unify Queries over Data, Ontologies, and Machine Learning Models in the PhenomeBrowser Knowledgebase
- Vec2SPARQL: integrating SPARQL queries and knowledge graph embeddings
- Semantic similarity and machine learning with ontologies
- Predicting protein functions using positive-unlabeled ranking with ontology-based priors
- DeepPheno: Predicting single gene loss-of-function phenotypes using an ontology-aware hierarchical classifier
- A Machine Learning Based Approach for Similarity Search on Biodiversity Knowledge Graphs
- Genomic diversity and antimicrobial resistance of Staphylococcus aureus in Saudi Arabia: a nationwide study using whole-genome sequencing
- CAGI6 ID panel challenge: assessment of phenotype and variant predictions in 415 children with neurodevelopmental disorders (NDDs)
- The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
- Molecular basis and cellular effects of Janus-class–driven cytoplasmic PYK2 coacervates
- DeepGO: predicting protein functions from sequence and interactions using a deep ontology-aware classifier
- DeepPVP: phenotype-based prioritization of causative variants using deep learning
- DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species
- Evaluating the effect of annotation size on measures of semantic similarity
- DeepGOWeb: fast and accurate protein function prediction on the (Semantic) Web
- DeepGOZero: improving protein function prediction from sequence and zero-shot learning based on ontology axioms
- A reference quality, fully annotated diploid genome from a Saudi individual
- Phased genome assemblies and pangenome graphs of human populations of Japan and Saudi Arabia
- Genomic landscape of retinoblastoma: Insights into risk stratification and precision pediatric Neuro-Oncology
- OligoPVP: Phenotype-driven analysis of individual genomic information to prioritize oligogenic disease variants
- Semantic prioritization of novel causative genomic variants
- Ontology-based validation and identification of regulatory phenotypes
- DeepGOMeta for functional insights into microbial communities using deep learning-based protein function prediction
- mOWL: Python library for machine learning with biomedical ontologies
- LLM Agent Based Protein Function Prediction
- Evaluating the effect of annotation size on measures of semantic similarity
- EL Embeddings: Geometric construction of models for the Description Logic EL++
- Computational prediction of protein functional annotations
- Annotating genomes with DeepGO protein function prediction tools
related people borg:linkedPerson
- Neuro-symbolic methods in Bioinformatics
- Ontology engineering and semantic interoperability
- Applied Ontology
- Protein function prediction
- Rare disease diagnostic support
- Drug mechanisms and systems biology
- Genomics
- Biomedical informatics
- Semantic similarity
- Metagenomics and microbial community function
- Phenotype informatics
- Bioengineering
Open in the interactive graph →
JSON-LD (this resource)
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Machine-readable copy: data.jsonld. Full dataset: kg.jsonld.