We develop architectures for processing massive, heterogeneous data using Semantic Web standards. This work includes the AberOWL infrastructure for ontology-based data access and methods for establishing interoperability across distributed databases through linked knowledge graphs.
- Section
- Foundations
- Keywords
- AberOWL, Semantic Web, OWL, OWL EL reasoning, ontology-based data access, linked data, interoperability
Connections
related papers borg:linkedPaper
- BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services
- Formal axioms in biomedical ontologies improve analysis and interpretation of associated data
- Aber-OWL: a framework for ontology-based data access in biology
- Quantitative evaluation of ontology design patterns for combining pathology and anatomy ontologies
- Neuro-symbolic representation learning on biological knowledge graphs
- FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation
- An open source knowledge graph ecosystem for the life sciences
- DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species
- FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration
- A Review of Current Standards and the Evolution of Histopathology Nomenclature for Laboratory Animals
- Usage of cell nomenclature in biomedical literature
- DeepGOWeb: fast and accurate protein function prediction on the (Semantic) Web
- DELE: Deductive EL++ Embeddings for Knowledge Base Completion
- Combining lexical and context features for automatic ontology extension
- DESM: portal for microbial knowledge exploration systems
- Experiences with Aber-OWL, an Ontology Repository with OWL EL Reasoning
- Towards semantic interoperability: finding and repairing hidden contradictions in biomedical ontologies
- Klarigi: Characteristic explanations for semantic biomedical data
- BioHackathon 2015: Semantics of data for life sciences and reproducible research
- The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery
- Interoperability between phenotype and anatomy ontologies
- A common layer of interoperability for biomedical ontologies based on OWL EL
- Interoperability between biomedical ontologies through relation expansion, upper-level ontologies and automatic reasoning
- The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions.
- Ontology design patterns to disambiguate relations between genes and gene products in GENIA
- Logical Gene Ontology Annotations (GOAL): exploring gene ontology annotations with OWL
- Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology
- An infrastructure for ontology-based information systems in biomedicine: RICORDO case study
- Ontology-based cross-species integration and analysis of Saccharomyces cerevisiae phenotypes
- The Units Ontology: a tool for integrating units of measurement in science
- Chapter Four - The Neurobehavior Ontology: An Ontology for Annotation and Integration of Behavior and Behavioral Phenotypes
- An integrative, translational approach to understanding rare and orphan genetically based diseases
- Evaluating Different Methods for Semantic Reasoning Over Ontologies
- Large-Scale Reasoning over Functions in Biomedical Ontologies
- To MIREOT or not to MIREOT? A case study of the impact of using MIREOT in the Experimental Factor Ontology (EFO)
- Using Aber-OWL for fast and scalable reasoning over BioPortal ontologies
- AberOWL: an ontology portal with OWL EL reasoning
- Robust Knowledge Graph Embedding via Denoising
- SPARQL2OWL: Towards Bridging the Semantic Gap Between RDF and OWL
- Using SPARQL to Unify Queries over Data, Ontologies, and Machine Learning Models in the PhenomeBrowser Knowledgebase
- Vec2SPARQL: integrating SPARQL queries and knowledge graph embeddings
- Fully Geometric Multi-hop Reasoning on Knowledge Graphs with Transitive Relations
- Investigation of the fundamental strategy for interoperability of description of biological measurements
- Integration of knowledge for personalized medicine: a pharmacogenomics case-study
- JOWO 2020: The Joint Ontology Workshops : Proceedings of the Joint Ontology Workshops co-located with the Bolzano Summer of Knowledge (BOSK 2020)
related projects borg:linkedProject
related people borg:linkedPerson
related courses borg:linkedCourse
Referenced by
research topics borg:topic
- Towards sound, complete, and explainable machine learning with biomedical ontologies (CRG11)
- Robert Hoehndorf
- Mona Alshahrani
- Maxat Kulmanov
- Sarah Alghamdi
- Yang Liu
- Fernando Zhapa-Camacho
- Sara Althubaiti
- Mahdi Bu Ali
- Miguel Angel Rodriguez Garcia
- Tengwei Song
- Paul N Schofield
- Quantitative evaluation of ontology design patterns for combining pathology and anatomy ontologies
- Combining lexical and context features for automatic ontology extension
- Formal axioms in biomedical ontologies improve analysis and interpretation of associated data
- Klarigi: Characteristic explanations for semantic biomedical data
- Towards semantic interoperability: finding and repairing hidden contradictions in biomedical ontologies
- Using SPARQL to Unify Queries over Data, Ontologies, and Machine Learning Models in the PhenomeBrowser Knowledgebase
- Vec2SPARQL: integrating SPARQL queries and knowledge graph embeddings
- BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services
- Aber-OWL: a framework for ontology-based data access in biology
- Neuro-symbolic representation learning on biological knowledge graphs
- FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation
- An open source knowledge graph ecosystem for the life sciences
- DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species
- FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration
- A Review of Current Standards and the Evolution of Histopathology Nomenclature for Laboratory Animals
- Usage of cell nomenclature in biomedical literature
- DeepGOWeb: fast and accurate protein function prediction on the (Semantic) Web
- DELE: Deductive EL++ Embeddings for Knowledge Base Completion
- DESM: portal for microbial knowledge exploration systems
- Experiences with Aber-OWL, an Ontology Repository with OWL EL Reasoning
- BioHackathon 2015: Semantics of data for life sciences and reproducible research
- The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery
- Interoperability between phenotype and anatomy ontologies
- A common layer of interoperability for biomedical ontologies based on OWL EL
- Interoperability between biomedical ontologies through relation expansion, upper-level ontologies and automatic reasoning
- The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions.
- Ontology design patterns to disambiguate relations between genes and gene products in GENIA
- Logical Gene Ontology Annotations (GOAL): exploring gene ontology annotations with OWL
- Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology
- An infrastructure for ontology-based information systems in biomedicine: RICORDO case study
- Ontology-based cross-species integration and analysis of Saccharomyces cerevisiae phenotypes
- The Units Ontology: a tool for integrating units of measurement in science
- Chapter Four - The Neurobehavior Ontology: An Ontology for Annotation and Integration of Behavior and Behavioral Phenotypes
- An integrative, translational approach to understanding rare and orphan genetically based diseases
- Evaluating Different Methods for Semantic Reasoning Over Ontologies
- Large-Scale Reasoning over Functions in Biomedical Ontologies
- To MIREOT or not to MIREOT? A case study of the impact of using MIREOT in the Experimental Factor Ontology (EFO)
- Using Aber-OWL for fast and scalable reasoning over BioPortal ontologies
- AberOWL: an ontology portal with OWL EL reasoning
- Robust Knowledge Graph Embedding via Denoising
- SPARQL2OWL: Towards Bridging the Semantic Gap Between RDF and OWL
- Fully Geometric Multi-hop Reasoning on Knowledge Graphs with Transitive Relations
- Investigation of the fundamental strategy for interoperability of description of biological measurements
- Integration of knowledge for personalized medicine: a pharmacogenomics case-study
- JOWO 2020: The Joint Ontology Workshops : Proceedings of the Joint Ontology Workshops co-located with the Bolzano Summer of Knowledge (BOSK 2020)
- Knowledge Representation and Reasoning
- Knowledge Representation and Reasoning
- Knowledge Representation and Reasoning
- Knowledge Representation and Reasoning
- Knowledge Representation and Reasoning
- Applied Ontology
- Knowledge Representation and Reasoning
- Applied Ontology
- Knowledge Representation and Reasoning
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