We contribute to the development of genomic resources and the analysis of population-specific genomic data. This includes reference genome assemblies, pangenome graphs for the Saudi and wider Middle Eastern population, variant-calling and structural-variant pipelines, and the analysis of antimicrobial resistance from whole-genome sequencing.
- Section
- Applications
- Keywords
- Saudi pangenome, reference genome, pangenome graph, variant calling, structural variant, whole-genome sequencing, GWAS, population genomics
Connections
related papers borg:linkedPaper
- The Impact of Mechanical Cues on the Metabolomic and Transcriptomic Profiles of Human Dermal Fibroblasts Cultured in Ultrashort Self-Assembling Peptide 3D Scaffolds
- Genomic diversity and antimicrobial resistance of Staphylococcus aureus in Saudi Arabia: a nationwide study using whole-genome sequencing
- What is the right sequencing approach? Solo VS extended family analysis in consanguineous populations
- DeepSVP: integration of genotype and phenotype for structural variant prioritization using deep learning
- GFVO: the Genomic Feature and Variation Ontology
- Whole genome transcriptomic profiling reveals distinct sex-specific responses to heat stroke
- VarLand: A pipeline to map the structural landscape of missense variants at the proteome scale
- Genomic landscape in Saudi patients with hepatocellular carcinoma using whole-genome sequencing: a pilot study
- A reference quality, fully annotated diploid genome from a Saudi individual
- Phased genome assemblies and pangenome graphs of human populations of Japan and Saudi Arabia
- Genomic landscape of retinoblastoma: Insights into risk stratification and precision pediatric Neuro-Oncology
- OligoPVP: Phenotype-driven analysis of individual genomic information to prioritize oligogenic disease variants
- Critical assessment of variant prioritization methods for rare disease diagnosis within the rare genomes project
- EMC10 homozygous variant identified in a family with global developmental delay, mild intellectual disability, and speech delay
- Phenotype-driven discovery of digenic variants in personal genome sequences
- Annotating genomes with DeepGO protein function prediction tools
related projects borg:linkedProject
- A public Saudi pangenome as reference for genomics in the Middle East
- Enabling mangrove restoration by AI-tailored microbiome fortification
- Evolutionary potential of corals to adapt to climate warming
- Sequencing and computational analysis of MRSA samples
- The Whale Shark 100: Applying Population Genomics to Understand Mysteries of the World's Largest Fish
related people borg:linkedPerson
related courses borg:linkedCourse
Referenced by
research topics borg:topic
- A public Saudi pangenome as reference for genomics in the Middle East
- Enabling mangrove restoration by AI-tailored microbiome fortification
- Evolutionary potential of corals to adapt to climate warming
- Sequencing and computational analysis of MRSA samples
- The Whale Shark 100: Applying Population Genomics to Understand Mysteries of the World's Largest Fish
- Robert Hoehndorf
- Imane Boudellioua
- Maxat Kulmanov
- Azza Althagafi
- Rund Tawfiq
- Yang Liu
- Kexin Niu
- Xi Peng
- Malak Althagafi
- Heribert Hirt
- Manuel Aranda
- Takashi Gojobori
- Mohammed Al Fageeh
- Vladimir Bajic
- Michael Berumen
- Phenotype-driven discovery of digenic variants in personal genome sequences
- The Impact of Mechanical Cues on the Metabolomic and Transcriptomic Profiles of Human Dermal Fibroblasts Cultured in Ultrashort Self-Assembling Peptide 3D Scaffolds
- Genomic diversity and antimicrobial resistance of Staphylococcus aureus in Saudi Arabia: a nationwide study using whole-genome sequencing
- What is the right sequencing approach? Solo VS extended family analysis in consanguineous populations
- DeepSVP: integration of genotype and phenotype for structural variant prioritization using deep learning
- GFVO: the Genomic Feature and Variation Ontology
- Whole genome transcriptomic profiling reveals distinct sex-specific responses to heat stroke
- VarLand: A pipeline to map the structural landscape of missense variants at the proteome scale
- Genomic landscape in Saudi patients with hepatocellular carcinoma using whole-genome sequencing: a pilot study
- A reference quality, fully annotated diploid genome from a Saudi individual
- Phased genome assemblies and pangenome graphs of human populations of Japan and Saudi Arabia
- Genomic landscape of retinoblastoma: Insights into risk stratification and precision pediatric Neuro-Oncology
- OligoPVP: Phenotype-driven analysis of individual genomic information to prioritize oligogenic disease variants
- Critical assessment of variant prioritization methods for rare disease diagnosis within the rare genomes project
- EMC10 homozygous variant identified in a family with global developmental delay, mild intellectual disability, and speech delay
- Annotating genomes with DeepGO protein function prediction tools
- Algorithms in Bioinformatics
- Algorithms in Bioinformatics
- Algorithms in Bioinformatics
Open in the interactive graph →
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